Posted by
CARL Philippe (LBP) on
Jul 30, 2014; 2:52pm
URL: http://imagej.273.s1.nabble.com/Not-so-easy-ROIs-determinations-tp5008966p5008973.html
Dear Michael,
Your proposed solution is indeed working, thanks a lot!!!
Just a small remark about your plugin Website: the name of the macro on the
Website should be "Versatile_Wand.java" and not "versatile_wand.java" which
is giving a compilation error.
I'm still in the process of studying all the other proposed solutions and
thanks a lot for all the contributors.
My best regards,
Philippe
-----Message d'origine-----
De : ImageJ Interest Group [mailto:
[hidden email]] De la part de
Michael Schmid
Envoyé : mercredi 30 juillet 2014 15:58
À :
[hidden email]
Objet : Re: Not so easy ROIs determinations
Hi Philippe,
one possible solution might be a macro like the following:
Threshold, Analyze particles, recording XStart, YStart to the Results table.
run("Analyze Particles...", "display clear record");
Then iterate over the results Table. For each entry, call the Versatile Wand
plugin with default options (i.e., 'record holes' should be unchecked) at
XStart, YStart, and add to the ROI Manager.
http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:versatile_wand:start
Michael
________________________________________________________________
On Jul 30, 2014, at 15:21, Philippe CARL wrote:
> Dear all,
>
> From the following picture :
>
>
http://punias.free.fr/ImageJ/ring.tif>
> I would like to extract automatically (i.e. by means of the use of a
> macro and/or plugin) the following ROI set:
>
>
http://punias.free.fr/ImageJ/RoiSet.zip>
> Does somebody have an idea on the best strategy to perform this?
>
> I thank you very much in advance for your help.
>
> My best regards,
>
> Philippe
>
>
>
> Philippe CARL
>
> Laboratoire de Biophotonique et Pharmacologie
>
> UMR 7213 CNRS - Université de Strasbourg
>
> Faculté de Pharmacie
>
> 74 route du Rhin
>
> 67401 ILLKIRCH
>
> Tel : +33(0)3 68 85 41 84
>
>
>
>
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