Re: Not so easy ROIs determinations

Posted by Michael Schmid on Jul 30, 2014; 3:39pm
URL: http://imagej.273.s1.nabble.com/Not-so-easy-ROIs-determinations-tp5008966p5008979.html

Hi Philippe,

unfortunately, there is a limitation of the DokuWiki system used for the ImageJ Information and Documentation Portal (http://imagejdocu.tudor.lu/), where also the Versatile Wand is accessible:
The names of uploaded files are always converted to lowercase.

So I can't fix it, you have to rename it yourself.

Michael
________________________________________________________________
On Jul 30, 2014, at 16:52, Philippe CARL wrote:

> Dear Michael,
> Your proposed solution is indeed working, thanks a lot!!!
> Just a small remark about your plugin Website: the name of the macro on the
> Website should be "Versatile_Wand.java" and not "versatile_wand.java" which
> is giving a compilation error.
> I'm still in the process of studying all the other proposed solutions and
> thanks a lot for all the contributors.
> My best regards,
> Philippe
>
> -----Message d'origine-----
> De : ImageJ Interest Group [mailto:[hidden email]] De la part de
> Michael Schmid
> Envoyé : mercredi 30 juillet 2014 15:58
> À : [hidden email]
> Objet : Re: Not so easy ROIs determinations
>
> Hi Philippe,
>
> one possible solution might be a macro like the following:
>
> Threshold, Analyze particles, recording XStart, YStart to the Results table.
>  run("Analyze Particles...", "display clear record");
>
> Then iterate over the results Table. For each entry, call the Versatile Wand
> plugin with default options (i.e., 'record holes' should be unchecked) at
> XStart, YStart, and add to the ROI Manager.
>
> http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:versatile_wand:st
> art
>
>
> Michael
> ________________________________________________________________
> On Jul 30, 2014, at 15:21, Philippe CARL wrote:
>
>> Dear all,
>>
>> From the following picture :
>>
>> http://punias.free.fr/ImageJ/ring.tif
>>
>> I would like to extract automatically (i.e. by means of the use of a
>> macro and/or plugin) the following ROI set:
>>
>> http://punias.free.fr/ImageJ/RoiSet.zip
>>
>> Does somebody have an idea on the best strategy to perform this?
>>
>> I thank you very much in advance for your help.
>>
>> My best regards,
>>
>> Philippe
>>
>>
>>
>> Philippe CARL
>>
>> Laboratoire de Biophotonique et Pharmacologie
>>
>> UMR 7213 CNRS - Université de Strasbourg
>>
>> Faculté de Pharmacie
>>
>> 74 route du Rhin
>>
>> 67401 ILLKIRCH
>>
>> Tel : [phone]
>>
>>
>>
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html