Re: Not so easy ROIs determinations

Posted by ctrueden on Jul 30, 2014; 6:38pm
URL: http://imagej.273.s1.nabble.com/Not-so-easy-ROIs-determinations-tp5008966p5008986.html

Hi Michael,

> So I can't fix it, you have to rename it yourself.

Another option would be to migrate the documentation to the ImageJ Wiki
instead (http://imagej.net/), which uses MediaWiki and has no such issues.

Regards,
Curtis



On Wed, Jul 30, 2014 at 10:39 AM, Michael Schmid <[hidden email]>
wrote:

> Hi Philippe,
>
> unfortunately, there is a limitation of the DokuWiki system used for the
> ImageJ Information and Documentation Portal (http://imagejdocu.tudor.lu/),
> where also the Versatile Wand is accessible:
> The names of uploaded files are always converted to lowercase.
>
> So I can't fix it, you have to rename it yourself.
>
> Michael
> ________________________________________________________________
> On Jul 30, 2014, at 16:52, Philippe CARL wrote:
>
> > Dear Michael,
> > Your proposed solution is indeed working, thanks a lot!!!
> > Just a small remark about your plugin Website: the name of the macro on
> the
> > Website should be "Versatile_Wand.java" and not "versatile_wand.java"
> which
> > is giving a compilation error.
> > I'm still in the process of studying all the other proposed solutions and
> > thanks a lot for all the contributors.
> > My best regards,
> > Philippe
> >
> > -----Message d'origine-----
> > De : ImageJ Interest Group [mailto:[hidden email]] De la part de
> > Michael Schmid
> > Envoyé : mercredi 30 juillet 2014 15:58
> > À : [hidden email]
> > Objet : Re: Not so easy ROIs determinations
> >
> > Hi Philippe,
> >
> > one possible solution might be a macro like the following:
> >
> > Threshold, Analyze particles, recording XStart, YStart to the Results
> table.
> >  run("Analyze Particles...", "display clear record");
> >
> > Then iterate over the results Table. For each entry, call the Versatile
> Wand
> > plugin with default options (i.e., 'record holes' should be unchecked) at
> > XStart, YStart, and add to the ROI Manager.
> >
> >
> http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:versatile_wand:st
> > art
> >
> >
> > Michael
> > ________________________________________________________________
> > On Jul 30, 2014, at 15:21, Philippe CARL wrote:
> >
> >> Dear all,
> >>
> >> From the following picture :
> >>
> >> http://punias.free.fr/ImageJ/ring.tif
> >>
> >> I would like to extract automatically (i.e. by means of the use of a
> >> macro and/or plugin) the following ROI set:
> >>
> >> http://punias.free.fr/ImageJ/RoiSet.zip
> >>
> >> Does somebody have an idea on the best strategy to perform this?
> >>
> >> I thank you very much in advance for your help.
> >>
> >> My best regards,
> >>
> >> Philippe
> >>
> >>
> >>
> >> Philippe CARL
> >>
> >> Laboratoire de Biophotonique et Pharmacologie
> >>
> >> UMR 7213 CNRS - Université de Strasbourg
> >>
> >> Faculté de Pharmacie
> >>
> >> 74 route du Rhin
> >>
> >> 67401 ILLKIRCH
> >>
> >> Tel : [phone]
> >>
> >>
> >>
> >>
> >> --
> >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> > --
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>
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>

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