JACop batch processing

Posted by Interleukin-10 on Aug 01, 2014; 11:00pm
URL: http://imagej.273.s1.nabble.com/JACop-batch-processing-tp5009015.html

Hello,

I have a collection of several dozen images and I would like to do a colocalisation analysis using JaCoP. Normally I do this manually image-by-image but I believe there must be a way to record the macro for it; I need to open each image, split it into the red and green channel, open JACoP and choose the object-based analysis for the two channels, setting the pixel size and threshold (which remain the same for all the images) and running the analysis.
 
What do you suggest? I would be very grateful for any comments.

Thanks,
Kamal