Posted by
Knecht, David on
Aug 07, 2014; 7:02pm
URL: http://imagej.273.s1.nabble.com/Import-image-sequence-tp5009060.html
I am trying to import an image sequence in Fiji (updated before running) and get the following error message. It works fine in ImageJ2. Dave
(Fiji Is Just) ImageJ 2.0.0-rc-9/1.49d; Java 1.6.0_65 [64-bit]; Mac OS X 10.9.4; 1483MB of 5817MB (25%)
java.lang.NullPointerException
at io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:781)
at io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:740)
at io.scif.AbstractReader.openPlane(AbstractReader.java:167)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:170)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:297)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:208)
at io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:225)
at io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:191)
at io.scif.img.ImgOpener.read(ImgOpener.java:808)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:775)
at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:761)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:362)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:257)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
at net.imagej.legacy.DefaultLegacyHooks.interceptOpenImage(DefaultLegacyHooks.java:430)
at ij.plugin.FolderOpener.run(FolderOpener.java:115)
at ij.IJ.runPlugIn(IJ.java:172)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:695)
Dr. David Knecht
Professor of Molecular and Cell Biology
Core Microscopy Facility Director
University of Connecticut
Storrs, CT 06269
860-486-2200
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