Re: JACop batch processing
Posted by
Pariksheet Nanda on
Aug 10, 2014; 10:50pm
URL: http://imagej.273.s1.nabble.com/JACop-batch-processing-tp5009015p5009084.html
Hi Kamal,
On Fri, Aug 1, 2014 at 7:00 PM, Interleukin-10
<
[hidden email]> wrote:
>
> I have a collection of several dozen images and I would like to do a
> colocalisation analysis using JaCoP. Normally I do this manually
> image-by-image but I believe there must be a way to record the macro for it;
> I need to open each image, split it into the red and green channel, open
> JACoP and choose the object-based analysis for the two channels, setting the
> pixel size and threshold (which remain the same for all the images) and
> running the analysis.
>
> What do you suggest? I would be very grateful for any comments.
Open your image, then launch the macro recorder using:
Plugins > Macros > Record...
Then as you perform your usual image processing steps, the
corresponding ImageJ macro commands will be recorded. When you are
done, in the Recorder window, hit the "Create" button to save the
macro. You can run it the next time with:
Plugins > Macros > Run...
Further reading:
http://imagej.nih.gov/ij/docs/guide/146-31.html#toc-Subsection-31.1http://imagej.nih.gov/ij/developer/macro/macros.htmlPariksheet
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