Posted by
Aryeh Weiss on
Aug 13, 2014; 3:43am
URL: http://imagej.273.s1.nabble.com/ImageJ-2-0-0-rc-13-released-tp5009146p5009158.html
On 8/13/14, 6:01 AM, Mark Hiner wrote:
Hi Mark
Works as advertised. Thank you for the quick response.
Biovoxxel plugins also work.
I still have the problem with compiling the java source of some of those
plugins, as I reported in that bug report.
Here again is part of that error:
Started Pseudo_flat_field_correction.java at Wed Aug 13 06:40:04 IDT 2014
Compiling 1 file in
/var/folders/z5/zp1ywtqs03q4g1jltsnm7bbr0000gs/T/java356799702755289229
/var/folders/z5/zp1ywtqs03q4g1jltsnm7bbr0000gs/T/java356799702755289229/src/main/java/Pseudo_flat_field_correction.java:109:
cannot find symbol
symbol : method convertToFloatProcessor()
location: class ij.process.ImageProcessor
duplicatedIp = duplicatedIp.convertToFloatProcessor();
^
/var/folders/z5/zp1ywtqs03q4g1jltsnm7bbr0000gs/T/java356799702755289229/src/main/java/Pseudo_flat_field_correction.java:140:
setProcessor(java.lang.String,ij.process.ImageProcessor) in ij.ImagePlus
cannot be applied to (ij.process.ImageProcessor)
duplicatedImp.setProcessor(duplicatedIp);
^
/var/folders/z5/zp1ywtqs03q4g1jltsnm7bbr0000gs/T/java356799702755289229/src/main/java/Pseudo_flat_field_correction.java:153:
setProcessor(java.lang.String,ij.process.ImageProcessor) in ij.ImagePlus
cannot be applied to (ij.process.ImageProcessor)
updatedBlurImage.setProcessor(visualizedBlur);
^
/var/folders/z5/zp1ywtqs03q4g1jltsnm7bbr0000gs/T/java356799702755289229/src/main/java/Pseudo_flat_field_correction.java:157:
setProcessor(java.lang.String,ij.process.ImageProcessor) in ij.ImagePlus
cannot be applied to (ij.process.ImageProcessor)
updatedBlurImage.setProcessor(visualizedBlur);
^
Seems odd to me that i cannot find a method in ImageProcessor.
Best regards,
--aryeh
> On Tue, Aug 12, 2014 at 9:41 PM, Aryeh Weiss <
[hidden email]
> <mailto:
[hidden email]>> wrote:
>
> On 8/12/14, 11:02 PM, Mark Hiner wrote:
>>
>> Hi Aryeh,
>>
>> It looks like you have some version skew with your imagej-legacy jar.
>>
>> Can you tell me what version of imagej-legacy is in your
>> Fiji.app/jars? Do you remember if anything was flagged locally
>> modified when you updated?
>>
>> Are you able to run Help > Update Fiji? If so, can you go to
>> advanced mode and find the imagej-legacy entry? You should be
>> able to update it through this interface. The expected version is
>> 0.8.0.
>>
>> Let me know what you find!
>>
>> - Mark
>>
>> On Aug 12, 2014 2:32 PM, "Aryeh Weiss" <
[hidden email]
>> <mailto:
[hidden email]>> wrote:
>>
>> On 8/12/14, 8:59 PM, Mark Hiner wrote:
>>
>> Hi all,
>>
>> Today, the ImageJ team is happy to announce a new public
>> release candidate
>> for ImageJ2:
>> version 2.0.0-rc-13.
>>
>> This release removes the anonymous plugin usage
>> statistics feature
>> introduced in 2.0.0-rc-11.
>>
>> ImageJ 2.0.0-rc-13 is available immediately via the Fiji
>> update site.
>>
>>
>> Following this update my FIji is completely broken. Anything
>> (including quiting) results in this error:
>>
>> (Fiji Is Just) ImageJ 2.0.0-rc-13/1.49f4; Java 1.6.0_65
>> [64-bit]; Mac OS X 10.9.4; 32MB of 6707MB (<1%)
>>
>> java.lang.NoClassDefFoundError: org/scijava/usage/UsageService
>> at
>> net.imagej.legacy.DefaultLegacyHooks.usageService(DefaultLegacyHooks.java:603)
>> at
>> net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:167)
>> at ij.IJ.runPlugIn(IJ.java)
>> at ij.Executer.runCommand(Executer.java:131)
>> at ij.Executer.run(Executer.java:64)
>> at java.lang.Thread.run(Thread.java:695)
>> Caused by: java.lang.ClassNotFoundException:
>> org.scijava.usage.UsageService
>> at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
>> at java.security.AccessController.doPrivileged(Native Method)
>> at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
>> at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
>> at
>> sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
>> at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
>> ... 6 more
>>
>> I could not use the bug reporter . I can pull my latest
>> backup, but perhaps someone can tell me if there is a way
>> (perhaps with the command line, to get around this.
>> Thanks in advance.
>>
>> --aryeh
>>
>> --
>> Aryeh Weiss
>> Faculty of Engineering
>> Bar Ilan University
>> Ramat Gan 52900 Israel
>>
>> Ph: 972-3-5317638
>> FAX: 972-3-7384051
>>
> Hi Mark,
>
> Yes -- I have a local version of imagej-legacy because that is
> what Johannes sent to fix a problem with biovoxxel plugins.
> It would be easiest for me if you sent to me a current
> imagej-legacy, because right now I cannot run the updater.
> I can use my backup and update again, but if it is not too much
> trouble, I prefer to just put the new imagej-legacy into the
> current updated version.
>
> Best regards,
>
> --aryeh
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph: 972-3-5317638
> FAX: 972-3-7384051
>
>
--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051
--
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