Thanks for your message, Aryeh!
Jordan L. Cocchiaro, PhD
Postdoctoral Fellow
Rawls Laboratory
Duke University
Dept. of Molecular Genetics and Microbiology
213 Research Drive
327 CARL Bldg.
DUMC Box 3580
Durham, NC 27710
Lab phone: 919-660-0894
From: Aryeh Weiss [via ImageJ] [mailto:ml-node+[hidden email]]
Sent: Friday, August 15, 2014 11:54 AM
To: Jordan Cocchiaro
Subject: Re: SCIFIO Unusable
On 8/15/14, 6:13 PM, Jordan Cocchiaro wrote:
> I believe that I am having a similar problem to the one that Michael posted.
> FIJI recently did a big update and now when I try to open images in FIJI
> there are automatic adjustments made. I usually disable that feature in the
> bioformats importer. I did some searching and found out about the switch to
> SCIFO. However, I tried to disable it from being the default and that
> doesn't seem to be working. Also, I recently got a new computer and did a
> fresh install of FIJI. For some reason the bioformats plugin is not working
> either even though it said that installation was successful. I can't get
> the dialog box to open. All of these problems started happening after the
> update and it took me a little bit to notice what seemed wrong when opening
> the images.
>
> Thank you for your help!
>
I have the most recent FIji update, with SCIFIO disabled, and I have no
problem with bioformats import.
Here are some tips:
1. Disable the Bioformats update site. You get bioformats with Fiji,
and that version is less likely to have problems.
2. Disable any other update sites if you do not need them. Many problem
have been caused by conflicts with some sites, though much of that has
been solved.
3. Use the buzilla bug reporter that is built into FIji (Help>Report a
Bug). I have had many bug promptly solved through this system.
--aryeh
--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel
Ph: 972-3-5317638
FAX: 972-3-7384051
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