Posted by
Trevor Steve on
URL: http://imagej.273.s1.nabble.com/Import-Zeiss-CZI-Data-into-ImageJ-tp5009482.html
Hi all,
I have histology images in the Zeiss CZI data format which I am trying to
import into ImageJ.
I have installed the Bio-Formats plugin and am using the Bio-Formats
Importer to load the images.
When I run the import for the raw histology images, ImageJ gives the
following:
loci.formats.UnsupportedCompressionException: JPEG-XR not yet supported
at
loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2822)
at
loci.formats.in.ZeissCZIReader$SubBlock.readPixelData(ZeissCZIReader.java:2794)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:561)
at loci.formats.FormatReader.setId(FormatReader.java:1317)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter.run(LociImporter.java:81)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:619)
I am not sure if I am making an error in the import settings, as the data
should not be JPEG-XR, but rather CZI.
Would gratefully appreciate any advice on this matter and how I can move
forward with importing my data.
Thanks,
Trevor
--
Trevor Steve, MD
Neurology Resident (PGY-7)
PhD Student, Department of Medicine
University of Alberta
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html