Re: .ND2 reader in BioFormats

Posted by Richard Mort-2 on Sep 05, 2014; 2:57pm
URL: http://imagej.273.s1.nabble.com/ND2-reader-in-BioFormats-tp5009525p5009526.html

Have you tried standard IJ1 plus bioformats? It always seems to work
better than FIJI/IJ2 in my experience.
Cheers
Rich

On 05/09/14 15:42, Christophe Leterrier wrote:

> Hi,
>
> This is primarily a BioFormat question.
>
> I'm trying to open a big Nikon .nd2 files in Fiji using BioFormats (not the
> new SciFiIO) in Fiji, Windows 7 64 bits, 64GB RAM. The "Reading file header
> part" usually peaks well above the actual file size with 17.6 GB (on ImageJ
> memory monitor) for a 6.3 GB nd2 file. For a 15.9 GB file, it maxes out the
> 60 GB allocated to Fiji. As it is the header reading part, it does not make
> a difference to try to open as a virtual stack or not.
>
> Is this a known situation? What are my options for opening these files?
>
> Thanks for your help,
>
> Christophe
>
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>

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Dr Richard Mort
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