Re: troubles opening lif flies with Image J and Fiji

Posted by Melissa Linkert-2 on Sep 22, 2014; 10:41pm
URL: http://imagej.273.s1.nabble.com/troubles-opening-lif-flies-with-Image-J-and-Fiji-tp3687147p5009716.html

Hi,

>> I have very similar problem in opening lif files with the latest version of
>> Fiji. We have recently bought a new Leica microscope with a recent version
>> of their LASAF software, since then I could not ope a single lif file coming
>> from that microscope. I have tried all the solutions listed before, but
>> still I get this message
>>
>> loci.formats.FormatException: Invalid Memory Block: found magic bytes 0,
>> expected 112
>> at loci.formats.in.LIFReader.initFile(LIFReader.java:401)
>
> I think the bioformats developers are also aware but I'm not sure how that's progressing, at the moment I'm telling our users to export to TIF in the leica software until the issue is resolved.

The Bio-Formats developers are indeed aware of this problem, as noted
on the OME issue tracking system:

http://trac.openmicroscopy.org.uk/ome/ticket/12144

We expect to have this fixed no later than the 5.1.0 release of
Bio-Formats later this year; if anyone wishes to be notified of updates
to that ticket, please let me know.

Regards,
-Melissa

On Mon, Sep 22, 2014 at 12:24:19PM +1000, Lachlan Whitehead wrote:

> We had the same problem when we got the upgraded software for one of our leica systems.
> We've been told that Leica is aware of the problem and is expecting a fix 'soon'.
> I think the bioformats developers are also aware but I'm not sure how that's progressing, at the moment I'm telling our users to export to TIF in the leica software until the issue is resolved.
>
> ----- Original Message -----
> From: "md574" <[hidden email]>
> To: [hidden email]
> Sent: Sunday, 21 September, 2014 8:43:32 PM
> Subject: Re: troubles opening lif flies with Image J and Fiji
>
> Dear List,
>
> I have very similar problem in opening lif files with the latest version of
> Fiji. We have recently bought a new Leica microscope with a recent version
> of their LASAF software, since then I could not ope a single lif file coming
> from that microscope. I have tried all the solutions listed before, but
> still I get this message
>
> loci.formats.FormatException: Invalid Memory Block: found magic bytes 0,
> expected 112
> at loci.formats.in.LIFReader.initFile(LIFReader.java:401)
> at loci.formats.FormatReader.setId(FormatReader.java:1238)
> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
> at loci.plugins.in.Importer.showDialogs(Importer.java:141)
> at loci.plugins.in.Importer.run(Importer.java:79)
> at loci.plugins.LociImporter.run(LociImporter.java:81)
> at ij.IJ.runUserPlugIn(IJ.java:202)
> at ij.IJ.runPlugIn(IJ.java:166)
> at ij.IJ.runPlugIn(IJ.java:155)
> at loci.plugins.shortcut.ShortcutPanel$1.run(ShortcutPanel.java:192)
>
> Any idea? I might just be idiot, but could not solve the problem.
> Thank you very much for your help.
>
>
>
>
>
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