BoneJ Analyze Skeleton on Skeletons with >32766 components?

Posted by Simon_Carr on
URL: http://imagej.273.s1.nabble.com/BoneJ-Analyze-Skeleton-on-Skeletons-with-32766-components-tp5009924.html

Dear All,

I am using BoneJ to undertake pore analysis of soils and sediments, but keep coming up against the Java limit of a maximum of 32,766 components. Unfortunately, my samples have populations of pores to be measured in the order of ~120,000 components, some of which extend right through the CT volume that has been scanned. Whilst I appreciate that I can sub-sample each volume into smaller pieces that bring the component number below the magic number, I am aware that this is compromising the quality of the analysis, because numerous large pore networks that extend as a single network through the whole volume are being split into perhaps four (or more) skeletons for subsequent analysis.

Can anyone advise whether there is a way to get around the Java-imposed limit on my volumes?

Regards,

Simon
_________________________________
Dr Simon Carr
School of Geography,
Queen Mary University of London,
Mile End Road, London, E1 4NS, UK.
t: 00 44 20 7882 2780
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twitter: @DrSimonCarr








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