3D volume measurement

Posted by Mauricio Aguirre Morales on Oct 08, 2014; 2:39pm
URL: http://imagej.273.s1.nabble.com/3D-volume-measurement-tp5009960.html

Dear Community

I am trying to quantify the volume of a hypha in a stack of images. The
3D model was made with a CLSM and I have done some treatment
(brightness-contrast, 3D filters, etc) and finally aquire a model that
could be transformed into 8 bit and being black and white with "white"
fungi and black background or just not fungi. When I use the option 3D
viewer in the description there is a volume displayed but I wonder how
this volume is acquired and furthermore I would really appreciate if
somebody can tell me a better, more accurate way to measure a volume or
even a manual selection way slide after slide or something similar.

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Sincerely
Mauricio Aguirre Morales


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