Multi Plot issues from ROI Manager
Posted by
S. Pagakis (IIBEAA) on
Oct 08, 2014; 3:28pm
URL: http://imagej.273.s1.nabble.com/Multi-Plot-issues-from-ROI-Manager-tp5009964.html
Hello everyone
We have RGB (3 colour fluorescence) images and we would like to plot a number of profiles along the SAME lines in each one of the R, G, B planes.
We use a composite image, ROI manager and the Multi PLot command
1) We have to do the Multi Plot command 3 times, once for each colour. Which command can we use in a macro to switch the active plane of a composite image?
Stack.setActiveChannels("000");
doesn't seem to do what we want
2) The results file, the X coordinates column is repeated for each plot. This is redundant info which makes the excel file twice as big. Is there any way to suppress this, as it can be supressed in the PlotProfile (option K) command?
3) could the output for the 3 channels be output in the same "Plot Values" file?
Thank you in advance
******************************
Stamatis Pagakis Ph.D.
Head, Biological Imaging
Biomedical Research Foundation, Academy of Athens
Soranou Efessiou 4, Athens 115 27 - Greece
M: +306946644955
W: +302106597481
FAX: +302106597544
http://www.bioacademy.gr/faculty-details/HM4/Stamatis--
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