Posted by
Balazadeh Mohtadi, Carlos on
Oct 19, 2014; 2:04pm
URL: http://imagej.273.s1.nabble.com/Plugin-for-finding-average-of-top-5-intensities-in-an-image-file-tp5010099p5010101.html
I've been playing around with that for my project. I didn't find an actual
plugin for it, but you can do it manually. There's a transect tool in
ImageJ, just create the transect line then hit ctrl+K which gives out a
plot profile for that line. It will show you the peaks in a graph and you
can generate 5 of these.
Fiji in the other hand has a plugin called Pixel Inspector which will throw
you a massive table that can examine a 10 pixel radius and give you
intensities per pixel within the small frame you create with it, this one
I've yet to play around with enough but it certainly is interesting.
You can also make a rectangle on the ROI and use the Surface plot option
in the analyze tab which will throw you a 3D view of the peaks (do it in
wireframe and without shading).
Hope that helped,
Best regards,
Keyvan Balazadeh
On Sun, Oct 19, 2014 at 7:03 AM, Yaseen Ladak <
[hidden email]>
wrote:
> Dear All,
>
> I am a new user to image J. Can someone please help me with a plugin that
> can find the average of top 5 intensities from the ROI or the image.
>
> I have attached a sample image and I want to find the average of top 5
> intensities in the image.
>
> I would be grateful for your help.
>
> Kind regards,
> Yaseen
>
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