Re: Plugin for finding average of top 5 intensities in an image file.

Posted by Emanuele Martini on Oct 20, 2014; 7:15am
URL: http://imagej.273.s1.nabble.com/Plugin-for-finding-average-of-top-5-intensities-in-an-image-file-tp5010099p5010109.html

Hi Yaseen,
I think that you can use histogram function, and then list the intensity and find the top five pixels and calculate the average of them.
It works also if you select an area, or a ROI: because histogram works with selections.

I don't know if exists a plugin that does that, but i think that would be not too much complicated write one.
Hoping to be helpful,
have a nice day
Emanuele Martini @IFOM-IEO Research Campus -MI-