Make binary with manual threshold

Posted by Glen MacDonald-2 on Oct 24, 2014; 5:07pm
URL: http://imagej.273.s1.nabble.com/Make-binary-with-manual-threshold-tp5010188.html

There seems to have been a change in behavior with Fiji for creating a binary image through a macro.

this worked 2 years ago :
        setThreshold(mn,255);
        run("Make Binary", "black”);
but now it only sets the threshold without the red overlay or creating a binary image.

I need to set a stack to binary using a computed threshold, not with any of the automatic threshold routines.  
thanks,

Glen MacDonald
        Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
        Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]

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