Re: adding a plugin to Fiji

Posted by Mark Hiner on Nov 13, 2014; 5:52pm
URL: http://imagej.273.s1.nabble.com/adding-a-plugin-to-Fiji-tp5010400p5010426.html

Hi Rodrigo,

>E:\RDE69~1.POR\Fiji.app\plugins\CINE_File.jar: java.util.zip.ZipException:
error in opening zip file

Apologies for overlooking this in my original response. I don't think you
are doing anything wrong, but this error suggests your .jar is corrupted
<http://stackoverflow.com/questions/24799533/java-util-zip-zipexception-error-in-opening-zip-file-tomcat>
.

I would recommend re-downloading the CINE_File.jar and trying again. As
suggested on SO, you can also try unzipping the jar with your preferred zip
utility to verify its integrity.

Hope that works!

Best,
Mark



On Thu, Nov 13, 2014 at 10:27 AM, Rodrigo Gonçalves <
[hidden email]> wrote:

> Hi Mark, thanks a lot for  your answer.
>
> I put the CINE_File.jar file into plugins directory, and then close Fiji.
> But after restarting, the option to import a CINE file is not there ...
> what am I doing wrong?
> IJ.getVersion: 2.0.0-rc-15/1.49k
> IJ.getFullVersion: 1.49k99Win 7 64 bits
>
>
> Thanks!
> Rodrigo
>
>       De: Mark Hiner <[hidden email]>
>  Para: [hidden email]
>  Enviado: Jueves, 13 de noviembre, 2014 11:04:54
>  Asunto: Re: adding a plugin to Fiji
>
> Hi Rodrigo,
>
> >how can I add this plugin and where to find it once installed?
>
> Any plugin in the /plugins directory of Fiji, or subdirectory there of,
> should be detected and loaded into Fiji *on launch*. The path to the plugin
> on disk is actually independent of its menu path in ImageJ or Fiji - so
> whether you put CINE_File.jar in /plugins or /plugins/Input-Output, it will
> appear under "File>Import>Cine File" regardless.
>
> >WARNING: The PluginClassLoader cannot be reset
>
> This is, unfortunately, a known limitation of Fiji right now - that Refresh
> Menus will not work like it does in ImageJ. Effectively, the plugins that
> are present when you launch Fiji are fixed until you close and re-launch.
>
> So you did the right thing by putting CINE_File.jar in Fiji.app/plugins;
> you should just need to restart Fiji to see the new menu option.
>
> Best,
> Mark
>
>
>
> On Thu, Nov 13, 2014 at 1:33 AM, Rodrigo Gonçalves <
> [hidden email]> wrote:
>
> > Hi all,
> > I want to use the Cine File Importer (*) plugin in Fiji but can't figure
> > out:
> > In ImageJ it works by downloading the jar file into the "Input-Output"
> > directory in the plugins directory and then use it with
> > File>Import>Cine File
> >
> > However in Fiji there is no "Input-Output" directory in the plugins, and
> > creating it doesn't seem to work... how can I add this plugin and where
> to
> > find it once installed?
> >
> > Another thing: I tried to install it from Plugins-Install it says the
> > plugin was installed, but I get also an error windows:
> > E:\RDE69~1.POR\Fiji.app\plugins\CINE_File.jar:
> java.util.zip.ZipException:
> > error in opening zip file
> > E:\RDE69~1.POR\Fiji.app\plugins\CINE_File.jar:
> java.util.zip.ZipException:
> > error in opening zip file
> > WARNING: The PluginClassLoader cannot be reset
> >
> >
> > Thanks a lot,Rodrigo
> >
> > * http://rsb.info.nih.gov/ij/plugins/cine-reader/index.html
> >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
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>
>
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>
>

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