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Re: Opening VSI files on Fiji

Posted by Olivier Burri on Nov 17, 2014; 3:22pm
URL: http://imagej.273.s1.nabble.com/Opening-VSI-files-on-Fiji-tp5010477p5010482.html

Dear Filipe,

As far as I can see, the error seems to come because he cannot see the number of series.

VSI files usually have a folder associated with them with the same name as the .VSI.

Eg you would have "Image01.vsi" and a folder in the same place called "_Image01_"

If this folder is missing there could be some issues.

We just tried opening some VSI files with and without the associated folder but were unable to replicate the "Invalid Series: 0" error. The best would be to send the dataset to Bioformats and see if they can help. Otherwise (If it's not too massive) you would post a link here and we can have a look.

Also please make sure bioformats is up to date. Take both update sites :
Bioformats and LOCI

All the best and good luck

Olivier Burri
Image Processing Specialist
EPFL BioImaging & Optics Platform
EPFL SV PTECH BIOP

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