access R from ImageJ macro

Posted by Neil Fazel on
URL: http://imagej.273.s1.nabble.com/access-R-from-ImageJ-macro-tp5010490.html

Is there a way to do statistical analysis, such as ANOVA, in ImageJ macros? The ImageJ User Guide refers to "RImageJ — R bindings for ImageJ"; this would have been perfect but apparently it no longer exists.

The use case is this: I have two samples of image pixels and I would like to do Student's T test on them to see if the average pixel values from the samples can be considered equal within a level of confidence, i.e. the samples come from the same population. I could write the formulas for the test statistics and degrees of freedom in an ImageJ macro, but I would still need table of values for T distribution for different degrees of freedom.

Thanks,
Neil

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