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Re: 3D object counter : extract data from the windows Statistics ...

Posted by Thomas Boudier on Nov 26, 2014; 12:24pm
URL: http://imagej.273.s1.nabble.com/3D-object-counter-extract-data-from-the-windows-Statistics-tp5010619p5010638.html

Hi Marie Laure,

In order to get the values from 3D Object Counter, you have to save the
results (File / save  as results) and then import the file (File/import
results). Then you can use the getResults functions, maybe you can also
have a look to 3DManager with extended macro functions :
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:start

best,

Thomas


Le 26/11/2014 19:31, SUBSCRIBE IMAGEJ Marie-Laure B a écrit :

> Hi Thomas,
>
> Thank you for your help,
>
> Stack.getStatistics(voxelCount, mean, min, max, stdDev) ; // no ""
> give me general statistics about image and not about objects.
>
> 3D object counter
> run("3D object counter...", "threshold=128 slice=56 min.=0 max.=963664 objects statistics summary");
> give me Volume, Surface , ...
> But I would like to extract it to put it into a variable.
> How can I do ?
>
> Marie Laure
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>

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   /***************************************************************/
      Thomas Boudier, Associate Professor, UPMC,
      Université Pierre et Marie Curie, Paris, France.
      BII (BioInformatics Institute)/UMI 2955 IPAL, Singapore.
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