Posted by
Thomas Boudier on
Nov 26, 2014; 12:24pm
URL: http://imagej.273.s1.nabble.com/3D-object-counter-extract-data-from-the-windows-Statistics-tp5010619p5010638.html
Hi Marie Laure,
In order to get the values from 3D Object Counter, you have to save the
results (File / save as results) and then import the file (File/import
results). Then you can use the getResults functions, maybe you can also
have a look to 3DManager with extended macro functions :
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:startbest,
Thomas
Le 26/11/2014 19:31, SUBSCRIBE IMAGEJ Marie-Laure B a écrit :
> Hi Thomas,
>
> Thank you for your help,
>
> Stack.getStatistics(voxelCount, mean, min, max, stdDev) ; // no ""
> give me general statistics about image and not about objects.
>
> 3D object counter
> run("3D object counter...", "threshold=128 slice=56 min.=0 max.=963664 objects statistics summary");
> give me Volume, Surface , ...
> But I would like to extract it to put it into a variable.
> How can I do ?
>
> Marie Laure
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
>
--
/***************************************************************/
Thomas Boudier, Associate Professor, UPMC,
Université Pierre et Marie Curie, Paris, France.
BII (BioInformatics Institute)/UMI 2955 IPAL, Singapore.
/**************************************************************/
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html