Re: analyze different marked cells

Posted by Ignacio Arganda-Carreras on
URL: http://imagej.273.s1.nabble.com/analyze-different-marked-cells-tp5010893p5010898.html

Hello Jorg,

I'm not sure which cells you want to keep, but you might want to give a try
to the SIOX segmentation plugin:

http://fiji.sc/SIOX

Or the Trainable Weka Segmentation:

http://fiji.sc/Trainable_Weka_Segmentation

Cheers!

ignacio


On Thu, Dec 11, 2014 at 10:48 AM, Jörg <[hidden email]>
wrote:

>
> Hello everyone,
>
> I try to discriminate between different marked cells (see attached). so i
> first substracted the background and then did a color threshold. but now i
> have the problem that there are not only the marked cells i want to count
> but also some edges of the other cells (2nd attachement). is there any way
> to get rid of them?
>
> best,
> jörg
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA

Phone: [phone]
Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html

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