SNT (Simple Neurite Tracer) and synapses

Posted by Niko Ehrenfeuchter on Jan 08, 2015; 12:37pm
URL: http://imagej.273.s1.nabble.com/SNT-Simple-Neurite-Tracer-and-synapses-tp5011123.html

Dear all,

in his announcement [1] to this list about updates on the Simple Neurite
Tracer from April 2011, Mark Longair wrote a section about colouring the
paths according to values in another stack / channel, e.g. with a
synaptic marker.

I'm wondering if anyone has more details about how to do this, or even a
snipped of code, as we're having exactly this use case right now that
we'd like to solve using SNT...

Thanks a lot!
~Niko

[1]
http://imagej.1557.x6.nabble.com/update-on-Simple-Neurite-Tracer-td3684924.html
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Niko Ehrenfeuchter | Image Analysis Specialist | Biozentrum, University
of Basel | Klingelbergstr. 50/70 | CH-4056 Basel
Phone: [phone] | [hidden email] |
www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch

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