Posted by
Cayanan, Michael D (398G) on
Jan 08, 2015; 9:59pm
URL: http://imagej.273.s1.nabble.com/FITS-Format-Support-tp5011134p5011139.html
Hi Curtis,
Thanks for the Bio-Formats library recommendation. I was able to install
it into the ImageJ library, but unfortunately, it does not appear to
support FITS files that contain multiple images within them.
I have a fits file with 2 HDUs, each describing an image (both 2-D
images). Not sure if I'm overlooking one of the Bio-Formats settings or
the menu options available through imageJ.
I see that there are javadocs for this library, so I'll go through this to
see if there is some sort of browse feature to support my use case.
Thanks,
Michael
On 1/8/15 12:44 PM, "Curtis Rueden" <
[hidden email]> wrote:
>Hi Michael,
>
>> I have a FITS file containing 2 images within the file, but ImageJ
>> looks like it only recognizes the first image. Is there a way to get
>> to that second image?
>
>Did you try using Bio-Formats [1]? It supports multi-plane FITS files
>(NAXIS3 > 1).
>
>> I have been using the ImageJ library
>
>Bio-Formats is usable as a standalone Java library [2] and also has an
>ImageJ-compatible API (e.g., [3]).
>
>Regards,
>Curtis
>
>[1]
http://fiji.sc/Bio-Formats>[2]
>
http://openmicroscopy.org/info/bio-formats/developers/java-library.html>[3]
>
https://github.com/openmicroscopy/bioformats/blob/v5.0.6/components/bio-fo>rmats-plugins/utils/Simple_Read.java
>
>On Thu, Jan 8, 2015 at 12:44 PM, Cayanan, Michael D (398G) <
>
[hidden email]> wrote:
>
>> Hi,
>>
>> I have been using the ImageJ library to read FITS images and converting
>> them to jpeg, gif, etc.
>>
>> I have a FITS file containing 2 images within the file, but ImageJ looks
>> like it only recognizes the first image. Is there a way to get to that
>> second image?
>>
>> Thanks in advance for your help,
>> Michael
>>
>> --
>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>
>
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