Re: clojure and fiji

Posted by Herbie-4 on Jan 28, 2015; 3:57pm
URL: http://imagej.273.s1.nabble.com/clojure-and-fiji-tp5011348p5011354.html

Rabih,

didn't you ask for variance computation a week or so ago?

Michael Schmid gave you valuable hints.

However, I really should like to know whether the Standard Deviation
(STD) would do for your purposes? If yes, you don't need any programming
language because ImageJ does provide the STD of a selected region.

 From "Analyze > Set Measurements" check "Standard deviation", then
select the desired area and use "Analyze > Measure". The STD of this
area will appear in the Results window. If you need the command in a
script you may record the command from "Plugins > Macros > Record"
(select the desired script language).

If you really need the variance instead, you may (later) square the STD.

HTH

Herbie

:::::::::::::::::::::::::::::::::::::
On 28.01.15 16:17, rabih assaf wrote:

> Hello, does anyone know how to calculate variance of a selected area
> using clojure?
>
>> Date: Wed, 28 Jan 2015 14:24:31 +0100 From: [hidden email]
>> Subject: Re: clojure and fiji To: [hidden email]
>>
>> Hi Rabih,
>>
>> On 28.01.15 14:03, rabih assaf wrote:
>>> Is there anyone familiar with using clojure language in imagej?
>>
>> You can find some clojure scripting examples here:
>> http://fiji.sc/Clojure_Scripting
>>
>> For more specific questions, this list is the best place to ask.
>>
>> Cheers, Jan
>>
>> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>  -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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