Re: clojure and fiji

Posted by Jan Eglinger on Jan 28, 2015; 4:33pm
URL: http://imagej.273.s1.nabble.com/clojure-and-fiji-tp5011348p5011356.html

Hi,

using the functions built into ImageJ, you can do something like this in
Clojure:

(def ^:dynamic *imp* (ij.WindowManager/getCurrentImage))
(.setRoi *imp* 10 10 40 40)
(ij.IJ/run "Set Measurements..." "standard redirect=None decimal=3")
(ij.IJ/run *imp* "Measure" "")

Hope that helps
Jan


On 28.01.15 16:29, Albert Cardona wrote:

> Rabih: all the pieces you need are listed in http://fiji.sc/Clojure_
> Scripting
>
> I know because I wrote them myself.
>
> Albert
>
> 2015-01-28 10:17 GMT-05:00 rabih assaf <[hidden email]>:
>
>> Hello, does anyone know how to calculate variance of a selected area using
>> clojure?
>>
>>> Date: Wed, 28 Jan 2015 14:24:31 +0100
>>> From: [hidden email]
>>> Subject: Re: clojure and fiji
>>> To: [hidden email]
>>>
>>> Hi Rabih,
>>>
>>> On 28.01.15 14:03, rabih assaf wrote:
>>>> Is there anyone familiar with using clojure language in imagej?
>>>>
>>>
>>> You can find some clojure scripting examples here:
>>> http://fiji.sc/Clojure_Scripting
>>>
>>> For more specific questions, this list is the best place to ask.
>>>
>>> Cheers,
>>> Jan
>>>
>>> --
>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
>
>

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