How to count cells in stacks? (tried 3D object counter)

Posted by KerL on Feb 05, 2015; 10:04pm
URL: http://imagej.273.s1.nabble.com/How-to-count-cells-in-stacks-tried-3D-object-counter-tp5011466.html

Hi all,

I have a stack of images that I would like to quantify. Some cells appear in more than 1 z-slice, therefore the possibility of counting a cell twice remains. Is there a macro that allows me to solve this problem, preferably one that allows me to use the regular ROI manager. I have tried using the 3D object counter plugin, but the 3D ROI manager does not allow me to look at the counted object in the original image.