Re: How to count cells in stacks? (tried 3D object counter)

Posted by Thomas Boudier on Feb 06, 2015; 5:36am
URL: http://imagej.273.s1.nabble.com/How-to-count-cells-in-stacks-tried-3D-object-counter-tp5011466p5011471.html

Hi,

With 3DManager, you can import segmented image ("Add image") from
3DCounter and view the objects contours as overlay on the current image
("Live roi").

Thomas

On 06/02/15 06:04, KerL wrote:

> Hi all,
>
> I have a stack of images that I would like to quantify. Some cells appear in
> more than 1 z-slice, therefore the possibility of counting a cell twice
> remains. Is there a macro that allows me to solve this problem, preferably
> one that allows me to use the regular ROI manager. I have tried using the 3D
> object counter plugin, but the 3D ROI manager does not allow me to look at
> the counted object in the original image.
>
> <http://imagej.1557.x6.nabble.com/file/n5011466/Capture.png>
>
>
>
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> Sent from the ImageJ mailing list archive at Nabble.com.
>
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--
   /***************************************************************/
      Thomas Boudier, Associate Professor, UPMC,
      Université Pierre et Marie Curie, Paris, France.
      BioInformatics Institute (BII)/IPAL, Singapore.
/**************************************************************/

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