Re: How to count cells in stacks? (tried 3D object counter)

Posted by Mauricio Aguirre Morales on Feb 06, 2015; 10:42am
URL: http://imagej.273.s1.nabble.com/How-to-count-cells-in-stacks-tried-3D-object-counter-tp5011466p5011476.html

Hi Kevin,
Try this plug in maybe it is not exactly what you were asking in the
initial e-mail but hopefully it could help somehow!
http://www.optinav.com/MeasureStack.htm

El 05/02/2015 a las 11:04 p.m., KerL escribió:

> Hi all,
>
> I have a stack of images that I would like to quantify. Some cells appear in
> more than 1 z-slice, therefore the possibility of counting a cell twice
> remains. Is there a macro that allows me to solve this problem, preferably
> one that allows me to use the regular ROI manager. I have tried using the 3D
> object counter plugin, but the 3D ROI manager does not allow me to look at
> the counted object in the original image.
>
> <http://imagej.1557.x6.nabble.com/file/n5011466/Capture.png>
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.com/How-to-count-cells-in-stacks-tried-3D-object-counter-tp5011466.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
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--
Sincerely
Mauricio Aguirre Morales

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