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Re: Multiview Reconstruction: NullPointerException

Posted by Lorenz Maier on Feb 28, 2015; 3:05pm
URL: http://imagej.273.s1.nabble.com/Multiview-Reconstruction-NullPointerException-tp5011811p5011813.html

Thanks Curtis!

Could you please CC me there? Or do you know a rough timespan when the fix will be included?

Best,
- Lorenz [mobile]



> On 28 Feb 2015, at 15:31, Curtis Rueden <[hidden email]> wrote:
>
> Hi Lorenz,
>
>> Trying to detect the interest points for registration with the
>> specification set to “interactive” gives me a NullPointerException.
>
> This ImageJ2 bug[1] only occurs when "Edit > Options > ImageJ2 > Enable
> ImageJ2 data structures" is checked.
>
> A fix is pending and will be uploaded soon. But in the meantime, disabling
> that option avoids the issue.
>
> Regards,
> Curtis
>
> [1] http://fiji.sc/bugzilla/show_bug.cgi?id=1010
>
> On Sat, Feb 28, 2015 at 4:35 AM, Lorenz Maier <
> [hidden email]> wrote:
>
>> Hi everyone,
>>
>> I just tried to use fresh download of Fiji (continuous release branch) for
>> registering a small set of images.
>> Trying to detect the interest points for registration with the
>> specification set to “interactive” gives me a NullPointerException.
>> Any ideas?
>>
>> java.lang.NullPointerException
>>               at net.imagej.legacy.translate.AbstractDisplayCreator.
>> getDataset(AbstractDisplayCreator.java:76)
>>               at net.imagej.legacy.translate.
>> GrayDisplayCreator.grayCase(GrayDisplayCreator.java:159)
>>               at net.imagej.legacy.translate.GrayDisplayCreator.
>> makeDisplay(GrayDisplayCreator.java:129)
>>               at net.imagej.legacy.translate.AbstractDisplayCreator.
>> createDisplay(AbstractDisplayCreator.java:63)
>>               at net.imagej.legacy.translate.DefaultImageTranslator.
>> createDisplay(DefaultImageTranslator.java:100)
>>               at net.imagej.legacy.translate.DefaultImageTranslator.
>> createDisplay(DefaultImageTranslator.java:84)
>>               at net.imagej.legacy.LegacyImageMap.registerLegacyImage(
>> LegacyImageMap.java:271)
>>               at net.imagej.legacy.DefaultLegacyHooks.registerImage(
>> DefaultLegacyHooks.java:177)
>>               at ij.gui.ImageWindow.show(ImageWindow.java)
>>               at ij.gui.ImageWindow.<init>(ImageWindow.java:138)
>>               at ij.gui.StackWindow.<init>(StackWindow.java:28)
>>               at ij.gui.StackWindow.<init>(StackWindow.java:24)
>>               at ij.ImagePlus.show(ImagePlus.java:388)
>>               at ij.ImagePlus.show(ImagePlus.java:363)
>>               at spim.fiji.plugin.interestpointdetection.
>> DifferenceOfGaussian.setInteractiveValues(DifferenceOfGaussian.java:257)
>>               at spim.fiji.plugin.interestpointdetection.
>> DifferenceOf.queryParameters(DifferenceOf.java:206)
>>               at spim.fiji.plugin.Interest_Point_Detection.run(Interest_
>> Point_Detection.java:127)
>>               at ij.IJ.runUserPlugIn(IJ.java:202)
>>               at ij.IJ.runPlugIn(IJ.java:166)
>>               at ij.Executer.runCommand(Executer.java:131)
>>               at ij.Executer.run(Executer.java:64)
>>               at java.lang.Thread.run(Thread.java:662)
>>
>> Information about your version of Java:
>>
>> os.arch => amd64
>> os.name => Windows 7
>> os.version => 6.1
>> java.version => 1.6.0_24
>> java.vendor => Sun Microsystems Inc.
>> java.runtime.name => Java(TM) SE Runtime Environment
>> java.runtime.version => 1.6.0_24-b07
>> java.vm.name => Java HotSpot(TM) 64-Bit Server VM
>> java.vm.version => 19.1-b02
>> java.vm.vendor => Sun Microsystems Inc.
>> java.vm.info => mixed mode
>> java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
>> java.specification.name => Java Platform API Specification
>> java.specification.version => 1.6
>> sun.cpu.endian => little
>> sun.desktop => windows
>> file.separator => \
>>
>> The up-to-date check says: REMIND_LATER
>>
>> Information relevant to JAVA_HOME related problems:
>>
>> JAVA_HOME is set to: C:\USERPR~1\Fiji.app/java/win64/jdk1.6.0_24//jre
>> imagej.dir => C:\USERPR~1\Fiji.app
>>
>> Information about the version of each plugin:
>>
>> Activated update sites:
>> ImageJ: http://update.imagej.net/ (last check:20150226203217)
>> Fiji: http://fiji.sc/update/ (last check:20150226203401)
>> 3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last
>> check:20141208085245)
>> BigDataViewer: http://sites.imagej.net/Pietzsch/ (last
>> check:20141221160506)
>> ClearVolume: http://sites.imagej.net/ClearVolume/ (last
>> check:20150225131557)
>> HDF5: http://sites.imagej.net/Ronneber/ (last check:20150214134119)
>> NucleusJ: http://sites.imagej.net/PouletAxel/ (last check:20141101103602)
>>
>>
>> Best regards,
>> Lorenz
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
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