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Re: can the summary table become a results table?

Posted by Aryeh Weiss on Feb 28, 2015; 8:25pm
URL: http://imagej.273.s1.nabble.com/how-to-update-ImagePlus-in-Python-tp5011768p5011817.html

Hi Michael

On 2/27/15 4:52 PM, Michael Schmid wrote:
> Hi Aryeh,
>
>> However, in my my python script, the Summary window has the title "Summary",, while in your js script
>> the Summary Window has the title "Summary of "+title.
>> Why is that?
> Maybe the title of your ImagePlus is the empty String ""?
>
Wayne sent me a reply off-list that explains it. He wrote:

/With stacks, the particle analyzer names the window "Summary of “+title. //
//With single images, it names it “Summary”. I would make it consistent
but that would break existing macros and plugins. /

In my case it is a single image, so the Summary window is called "Summary".

Best regards
--aryeh


>> One other question. Is there a way to find all of the classes in which a given method is implemented. For example, Can I search the API to find all of the classes for which getResultsTable() is implemented?
> Probably the easiest way is searching for the String in the sources.
> Quick&dirty: Google search for
>   site:rsb.info.nih.gov/ij/developer/source getResultsTable
> Better:
> Download the sources and search the directory on your computer, e.g. using
>   grep -R sources/ij getResultsTable
> in the Linux/MacOS command line.
>
> Michael
> ________________________________________________________________
> On Feb 27, 2015, at 12:35, Aryeh Weiss wrote:
>
>> On 2/27/15 5:20 AM, Rasband, Wayne (NIH/NIMH) [E] wrote:
>>> On Feb 26, 2015, at 2:30 PM, Aryeh Weiss <[hidden email]> wrote:
>>>> Wayne -- thank you for your explanation of the slice labels.
>>>>
>>>> I have a question about the Summary table generated by the analyzer.
>>>>
>>>> I would like to add a column to it, the way one might do with the results table.
>>> The summary tables created by the particle analyzer are results tables. Here is a JavaScript example that creates a Summary table and adds two columns to it:
>>>
>>>   img = IJ.openImage("http://imagej.nih.gov/ij/images/mri-stack.zip");
>>>   title = img.getTitle();
>>>   IJ.setAutoThreshold(img, "Huang dark");
>>>   IJ.run(img, "Analyze Particles...", "size=1000 summarize stack");
>>>   frame = WindowManager.getFrame("Summary of "+title);
>>>   rt = frame.getTextPanel().getResultsTable();
>>>   for (i=0; i<rt.size(); i++) {
>>>      rt.setValue("Extra1", i, i*100);
>>>      rt.setValue("Extra2", i, "Row "+(i+1));
>>>   }
>>>   rt.show("Summary of "+title);
>>>
>>> -wayne
>>>
>> Thank you -- this is just what I wanted..
>> However, in my my python script, the Summary window has the title "Summary",, while in your js script
>> the Summary Window has the title "Summary of "+title.
>> Why is that?
>>
>> One other question. Is there a way to find all of the classes in which a given method is implemented. For example, Can I search the API to find all of the classes for which getResultsTable() is implemented?
>>
>> --aryeh
>>>> I came up with the following:
>>>>     IJ.renameResults("Summary", "Results")
>>>>
>>>>    rtSummary = ResultsTable.getResultsTable()
>>>>
>>>>    rtSummary.setValue("Slice", rtSummary.getCounter()-2, channelLabels[channel-1]+"_bg")
>>>>    rtSummary.setValue("WeightedMean", rtSummary.getCounter()-2, bgMeanWeighted)
>>>>    rtSummary.setValue("Slice", rtSummary.getCounter()-1, channelLabels[channel-1]+"_cells")
>>>>    rtSummary.setValue("StdDev", rtSummary.getCounter()-1, stdDev)
>>>>    IJ.renameResults("Results", "Summary")
>>>>
>>>> So I rename the summary table, and then I use getResultsTable() to assign it to rtSummary.
>>>> This works -- each call to the analyzer adds to the Summary table, and then I add my items as above.
>>>>
>>>> It would be nice to  be able to hand the Summary table to a results table constructor, like:
>>>> rtSummary = ResultsTable("Summary")
>>>>
>>>> Is there a better way to do this? (Or more correctly -- what is the best way to do this?)
>>>>
>>>> —aryeh
>>>
>>> --
>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>> --
>> Aryeh Weiss
>> Faculty of Engineering
>> Bar Ilan University
>> Ramat Gan 52900 Israel
>>
>> Ph:  972-3-5317638
>> FAX: 972-3-7384051
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>


--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


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