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Re: Multiview Reconstruction: NullPointerException

Posted by ctrueden on Mar 02, 2015; 5:33am
URL: http://imagej.273.s1.nabble.com/Multiview-Reconstruction-NullPointerException-tp5011811p5011823.html

Hi Lorenz,

> do you know a rough timespan when the fix will be included?

The fix has been uploaded now; run Help > Update... to receive it.

> Could you please CC me there?

In the future, if you ever want to CC yourself on a Bugzilla issue, you
would need to create an account and then add yourself to the CC (IIRC,
Bugzilla only lets you CC registered users/emails).

Regards,
Curtis

On Sat, Feb 28, 2015 at 9:05 AM, Lorenz Maier <
[hidden email]> wrote:

> Thanks Curtis!
>
> Could you please CC me there? Or do you know a rough timespan when the fix
> will be included?
>
> Best,
> - Lorenz [mobile]
>
>
>
> > On 28 Feb 2015, at 15:31, Curtis Rueden <[hidden email]> wrote:
> >
> > Hi Lorenz,
> >
> >> Trying to detect the interest points for registration with the
> >> specification set to “interactive” gives me a NullPointerException.
> >
> > This ImageJ2 bug[1] only occurs when "Edit > Options > ImageJ2 > Enable
> > ImageJ2 data structures" is checked.
> >
> > A fix is pending and will be uploaded soon. But in the meantime,
> disabling
> > that option avoids the issue.
> >
> > Regards,
> > Curtis
> >
> > [1] http://fiji.sc/bugzilla/show_bug.cgi?id=1010
> >
> > On Sat, Feb 28, 2015 at 4:35 AM, Lorenz Maier <
> > [hidden email]> wrote:
> >
> >> Hi everyone,
> >>
> >> I just tried to use fresh download of Fiji (continuous release branch)
> for
> >> registering a small set of images.
> >> Trying to detect the interest points for registration with the
> >> specification set to “interactive” gives me a NullPointerException.
> >> Any ideas?
> >>
> >> java.lang.NullPointerException
> >>               at net.imagej.legacy.translate.AbstractDisplayCreator.
> >> getDataset(AbstractDisplayCreator.java:76)
> >>               at net.imagej.legacy.translate.
> >> GrayDisplayCreator.grayCase(GrayDisplayCreator.java:159)
> >>               at net.imagej.legacy.translate.GrayDisplayCreator.
> >> makeDisplay(GrayDisplayCreator.java:129)
> >>               at net.imagej.legacy.translate.AbstractDisplayCreator.
> >> createDisplay(AbstractDisplayCreator.java:63)
> >>               at net.imagej.legacy.translate.DefaultImageTranslator.
> >> createDisplay(DefaultImageTranslator.java:100)
> >>               at net.imagej.legacy.translate.DefaultImageTranslator.
> >> createDisplay(DefaultImageTranslator.java:84)
> >>               at net.imagej.legacy.LegacyImageMap.registerLegacyImage(
> >> LegacyImageMap.java:271)
> >>               at net.imagej.legacy.DefaultLegacyHooks.registerImage(
> >> DefaultLegacyHooks.java:177)
> >>               at ij.gui.ImageWindow.show(ImageWindow.java)
> >>               at ij.gui.ImageWindow.<init>(ImageWindow.java:138)
> >>               at ij.gui.StackWindow.<init>(StackWindow.java:28)
> >>               at ij.gui.StackWindow.<init>(StackWindow.java:24)
> >>               at ij.ImagePlus.show(ImagePlus.java:388)
> >>               at ij.ImagePlus.show(ImagePlus.java:363)
> >>               at spim.fiji.plugin.interestpointdetection.
> >> DifferenceOfGaussian.setInteractiveValues(DifferenceOfGaussian.java:257)
> >>               at spim.fiji.plugin.interestpointdetection.
> >> DifferenceOf.queryParameters(DifferenceOf.java:206)
> >>               at spim.fiji.plugin.Interest_Point_Detection.run(Interest_
> >> Point_Detection.java:127)
> >>               at ij.IJ.runUserPlugIn(IJ.java:202)
> >>               at ij.IJ.runPlugIn(IJ.java:166)
> >>               at ij.Executer.runCommand(Executer.java:131)
> >>               at ij.Executer.run(Executer.java:64)
> >>               at java.lang.Thread.run(Thread.java:662)
> >>
> >> Information about your version of Java:
> >>
> >> os.arch => amd64
> >> os.name => Windows 7
> >> os.version => 6.1
> >> java.version => 1.6.0_24
> >> java.vendor => Sun Microsystems Inc.
> >> java.runtime.name => Java(TM) SE Runtime Environment
> >> java.runtime.version => 1.6.0_24-b07
> >> java.vm.name => Java HotSpot(TM) 64-Bit Server VM
> >> java.vm.version => 19.1-b02
> >> java.vm.vendor => Sun Microsystems Inc.
> >> java.vm.info => mixed mode
> >> java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
> >> java.specification.name => Java Platform API Specification
> >> java.specification.version => 1.6
> >> sun.cpu.endian => little
> >> sun.desktop => windows
> >> file.separator => \
> >>
> >> The up-to-date check says: REMIND_LATER
> >>
> >> Information relevant to JAVA_HOME related problems:
> >>
> >> JAVA_HOME is set to: C:\USERPR~1\Fiji.app/java/win64/jdk1.6.0_24//jre
> >> imagej.dir => C:\USERPR~1\Fiji.app
> >>
> >> Information about the version of each plugin:
> >>
> >> Activated update sites:
> >> ImageJ: http://update.imagej.net/ (last check:20150226203217)
> >> Fiji: http://fiji.sc/update/ (last check:20150226203401)
> >> 3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last
> >> check:20141208085245)
> >> BigDataViewer: http://sites.imagej.net/Pietzsch/ (last
> >> check:20141221160506)
> >> ClearVolume: http://sites.imagej.net/ClearVolume/ (last
> >> check:20150225131557)
> >> HDF5: http://sites.imagej.net/Ronneber/ (last check:20150214134119)
> >> NucleusJ: http://sites.imagej.net/PouletAxel/ (last
> check:20141101103602)
> >>
> >>
> >> Best regards,
> >> Lorenz
> >>
> >> --
> >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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