Posted by
Ignacio Arganda-Carreras on
Mar 02, 2015; 4:27pm
URL: http://imagej.273.s1.nabble.com/3D-skeleton-and-length-measurement-tp5011810p5011831.html
Hello Paola,
You're not the first person on asking me about this lately. How would you
like to visualize the objects? In a new skeleton image where each skeleton
voxel has the value of its corresponding skeleton id?
ignacio
On Fri, Feb 27, 2015 at 8:31 PM, Paola Lepanto <
[hidden email]>
wrote:
> Hello
> I´m using the "skeletonize (2D/3D)" and "analyze skeleton (2D/3D)" plugins
> to measure the length of cilia in confocal microscopy stacks.
> Is it possible to assign each measurement given by the "analyze skeleton"
> plugin to the object being measured? I know that each branch comes with its
> spatial localization coordinates, but it is pretty difficult to find the
> object using this information, specially when there are many of them in the
> stack. What I have tried is to combine this plugin with the analysis of the
> skeletons using the "3D object counter" and "3D object manager" plugins,
> but I still can´t relate the object in the stack with the skeleton being
> measured using the "analyze skeleton" plugin.
>
> Thanks in advance
>
> Paola
> PhD Student
> Institut Pasteur Montevideo
>
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http://imagej.nih.gov/ij/list.html>
--
Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA
Phone: (001) 617-324-3747
Website:
http://bioweb.cnb.csic.es/~iarganda/index_EN.html--
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