FW: Directionality plugin - getting Directionality analysis output values
Posted by Jacqueline Ross on Mar 15, 2015; 11:11pm
URL: http://imagej.273.s1.nabble.com/FW-Directionality-plugin-getting-Directionality-analysis-output-values-tp5011976.html
Dear Jean-Yves (and other Directionality plugin users!),
My first attempt to send this email to the listserv was rejected so I'm' resending with a JPG instead of PDF so I apologise that you may be receiving it twice.
I'm attempting to help a colleague with the Directionality plugin that you created. He wants to automatically analyse around 2000 images and wants the Directionality analysis output as shown in the attached PDF as well as the Results table.
I had a look on the Fiji website here<http://fiji.sc/Directionality> and tried using the script you have there but I couldn't get it to work. I just kept getting errors. The way I was using it was running the plugin first and then using the macro. Perhaps that's not the way it's intended to be used...
I am not familiar with Python and usually use the standard ImageJ format ijm for macros as I rely fairly heavily on the Macro Recorder. Although I did dig out a guide to Python to see if I could figure out the problem myself - no success as yet.
Would you be able to send me an example macro for this that I can open directly in Fiji?
At the moment, all we do is draw a horizontal line across the image using the line tool and then run the Directionality plugin with the default settings. It would be good to be able to save out the Results table and the other table.
I have CCd the listserv in case other people are also interested in the answer. Any help would be very much appreciated:).
Kind regards,
Jacqui
Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit
School of Medical Sciences
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND
Tel: 64 9 923 7438
Fax: 64 9 373 7484
http://www.fmhs.auckland.ac.nz/sms/biru/
--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
URL: http://imagej.273.s1.nabble.com/FW-Directionality-plugin-getting-Directionality-analysis-output-values-tp5011976.html
Dear Jean-Yves (and other Directionality plugin users!),
My first attempt to send this email to the listserv was rejected so I'm' resending with a JPG instead of PDF so I apologise that you may be receiving it twice.
I'm attempting to help a colleague with the Directionality plugin that you created. He wants to automatically analyse around 2000 images and wants the Directionality analysis output as shown in the attached PDF as well as the Results table.
I had a look on the Fiji website here<http://fiji.sc/Directionality> and tried using the script you have there but I couldn't get it to work. I just kept getting errors. The way I was using it was running the plugin first and then using the macro. Perhaps that's not the way it's intended to be used...
I am not familiar with Python and usually use the standard ImageJ format ijm for macros as I rely fairly heavily on the Macro Recorder. Although I did dig out a guide to Python to see if I could figure out the problem myself - no success as yet.
Would you be able to send me an example macro for this that I can open directly in Fiji?
At the moment, all we do is draw a horizontal line across the image using the line tool and then run the Directionality plugin with the default settings. It would be good to be able to save out the Results table and the other table.
I have CCd the listserv in case other people are also interested in the answer. Any help would be very much appreciated:).
Kind regards,
Jacqui
Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit
School of Medical Sciences
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND
Tel: 64 9 923 7438
Fax: 64 9 373 7484
http://www.fmhs.auckland.ac.nz/sms/biru/
--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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