Re: FW: Directionality plugin - getting Directionality analysis output values

Posted by Herbie-4 on Mar 16, 2015; 11:02am
URL: http://imagej.273.s1.nabble.com/FW-Directionality-plugin-getting-Directionality-analysis-output-values-tp5011976p5011983.html

Jacqui,

in case you are also interested in pros & cons of common approaches to
global/regional orientation analysis, here are links to papers

<www.gluender.de/Writings/WritingsTexts/HardText.html#Gl-2013-1>

<www.gluender.de/Writings/WritingsTexts/HardText.html#Gl-1986-2>

Best regards

Herbie

:::::::::::::::::::::::::::::::::::::::::
Am 16.03.15 um 00:11 schrieb Jacqui Ross:

> Dear Jean-Yves (and other Directionality plugin users!),
>
> My first attempt to send this email to the listserv was rejected so
> I'm' resending with a JPG instead of PDF so I apologise that you may
> be receiving it twice.
>
> I'm attempting to help a colleague with the Directionality plugin
> that you created. He wants to automatically analyse around 2000
> images and wants the Directionality analysis output as shown in the
> attached PDF as well as the Results table.
>
> I had a look on the Fiji website here<http://fiji.sc/Directionality>
> and tried using the script you have there but I couldn't get it to
> work. I just kept getting errors. The way I was using it was running
> the plugin first and then using the macro. Perhaps that's not the way
> it's intended to be used...
>
> I am not familiar with Python and usually use the standard ImageJ
> format ijm for macros as I rely fairly heavily on the Macro Recorder.
> Although I did dig out a guide to Python to see if I could figure out
> the problem myself - no success as yet.
>
> Would you be able to send me an example macro for this that I can
> open directly in Fiji?
>
> At the moment, all we do is draw a horizontal line across the image
> using the line tool and then run the Directionality plugin with the
> default settings. It would be good to be able to save out the Results
> table and the other table.
>
> I have CCd the listserv in case other people are also interested in
> the answer. Any help would be very much appreciated:).
>
> Kind regards,
>
> Jacqui
>
> Jacqueline Ross Biomedical Imaging Microscopist Biomedical Imaging
> Research Unit School of Medical Sciences Faculty of Medical & Health
> Sciences The University of Auckland Private Bag 92019 Auckland 1142,
> NEW ZEALAND
>
> Tel: [phone] Fax: [phone]
>
> http://www.fmhs.auckland.ac.nz/sms/biru/
>
>
> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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