Re: Water-shedding non-circular objects (w/ Attachment)

Posted by Ignacio Arganda-Carreras on
URL: http://imagej.273.s1.nabble.com/Water-shedding-non-circular-objects-w-Attachment-tp5012071p5012073.html

Hello Clay,

You can also give a try to the Morphological Segmentation plugin:
http://fiji.sc/Morphological_Segmentation

Best,

ignacio

On Fri, Mar 20, 2015 at 9:15 AM, Niko Ehrenfeuchter <
[hidden email]> wrote:

> Dear anonymous,
>
> you could have a look at Jan Brocher's "Irregular Watershed":
>
> http://fiji.sc/BioVoxxel_Toolbox#Watershed_Irregular_Structures
>
> Cheers
> Niko
>
>
> On 19.03.2015 22:36, Clay Morton wrote:
>
>>   Hey good people, I was wondering if anyone knew of a way to
>> successfully separate touching particles that are not circular is shape. It
>> seems that the water-shedding function only separates touching particles if
>> they are circular, but has difficulty in correctly separating different
>> shapes. Attached is an image that I have been working with. As you can see
>> when a "crescent" shaped cell (sickle cell) is touching a circular cell
>> (flat red blood cell), proper division does not occur. Also elliptical
>> cells are sometimes cut in half (lower middle image).?Any ideas how I could
>> correct this?
>>
>> Thanks
>>
>>
>>
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>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>>
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>

--
Ignacio Arganda-Carreras, Ph.D.
Seung's lab, 46-5065
Department of Brain and Cognitive Sciences
Massachusetts Institute of Technology
43 Vassar St.
Cambridge, MA 02139
USA

Phone: [phone]
Website: http://bioweb.cnb.csic.es/~iarganda/index_EN.html

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