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Re: Bio-Formats importer broken after latest Fiji update?

Posted by lechristophe on Mar 24, 2015; 12:06pm
URL: http://imagej.273.s1.nabble.com/Bio-Formats-importer-broken-after-latest-Fiji-update-tp5012127p5012131.html

I confirm this, had to deselect the Bio-Format update site.

On Tue, Mar 24, 2015 at 12:22 PM, Aryeh Weiss <[hidden email]> wrote:

> On 3/24/15 12:25 PM, Martin Höhne wrote:
>
>> Dear All,
>>
>> Fiji just did it´s auto-update after startup, and it seems that the
>> bioformats-importer is broken.
>>
>> Plugin > Bio-Formats > Bio-Formats Importer
>>
>> gives the error message pasted below. Is this a general problem or only my
>> configuration (Latest Fiji on Win7)
>>
>> Thanks
>> Martin
>>
>> ---------
>> (Fiji Is Just) ImageJ 2.0.0-rc-26/1.49p; Java 1.6.0_24 [64-bit]; Windows 7
>> 6.1; 23MB of 2975MB (<1%)
>>   java.lang.NoClassDefFoundError: Could not initialize class
>> loci.common.Location
>>         at loci.plugins.in.ImporterOptions.parseArg(
>> ImporterOptions.java:171)
>>         at loci.plugins.in.Importer.parseOptions(Importer.java:112)
>>         at loci.plugins.in.Importer.run(Importer.java:69)
>>         at loci.plugins.LociImporter.run(LociImporter.java:78)
>>         at ij.IJ.runUserPlugIn(IJ.java:199)
>>         at ij.IJ.runPlugIn(IJ.java:163)
>>         at ij.Executer.runCommand(Executer.java:131)
>>         at ij.Executer.run(Executer.java:64)
>>         at java.lang.Thread.run(Thread.java:662)
>>
>>
>>
>>
> I confirm this on OSX Yosemite. You can work around by deselecting the
> Bioformats update site, so that you get Bioformats from the Fiji update
> site. They are still at 5.0.7, and it works. However, if you read
> complicated ND2 files, you will need the 5.0.2 version of the gpl jar file.
>
> --aryeh
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: 972-3-7384051
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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