http://imagej.273.s1.nabble.com/Bio-Formats-importer-broken-after-latest-Fiji-update-tp5012127p5012132.html
Sorry for the inconvenience. Yesterday on the Fiji bugzilla[1] it was
update site. Thank you for pointing out that core functionality is broken
Bio-Formats components. We'll look into it and hope to have a fix shortly.
> I confirm this, had to deselect the Bio-Format update site.
>
> On Tue, Mar 24, 2015 at 12:22 PM, Aryeh Weiss <
[hidden email]> wrote:
>
> > On 3/24/15 12:25 PM, Martin Höhne wrote:
> >
> >> Dear All,
> >>
> >> Fiji just did it´s auto-update after startup, and it seems that the
> >> bioformats-importer is broken.
> >>
> >> Plugin > Bio-Formats > Bio-Formats Importer
> >>
> >> gives the error message pasted below. Is this a general problem or only
> my
> >> configuration (Latest Fiji on Win7)
> >>
> >> Thanks
> >> Martin
> >>
> >> ---------
> >> (Fiji Is Just) ImageJ 2.0.0-rc-26/1.49p; Java 1.6.0_24 [64-bit];
> Windows 7
> >> 6.1; 23MB of 2975MB (<1%)
> >> java.lang.NoClassDefFoundError: Could not initialize class
> >> loci.common.Location
> >> at loci.plugins.in.ImporterOptions.parseArg(
> >> ImporterOptions.java:171)
> >> at loci.plugins.in.Importer.parseOptions(Importer.java:112)
> >> at loci.plugins.in.Importer.run(Importer.java:69)
> >> at loci.plugins.LociImporter.run(LociImporter.java:78)
> >> at ij.IJ.runUserPlugIn(IJ.java:199)
> >> at ij.IJ.runPlugIn(IJ.java:163)
> >> at ij.Executer.runCommand(Executer.java:131)
> >> at ij.Executer.run(Executer.java:64)
> >> at java.lang.Thread.run(Thread.java:662)
> >>
> >>
> >>
> >>
> > I confirm this on OSX Yosemite. You can work around by deselecting the
> > Bioformats update site, so that you get Bioformats from the Fiji update
> > site. They are still at 5.0.7, and it works. However, if you read
> > complicated ND2 files, you will need the 5.0.2 version of the gpl jar
> file.
> >
> > --aryeh
> >
> > --
> > Aryeh Weiss
> > Faculty of Engineering
> > Bar Ilan University
> > Ramat Gan 52900 Israel
> >
> > Ph: 972-3-5317638
> > FAX: 972-3-7384051
> >
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
> --
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