http://imagej.273.s1.nabble.com/Bio-Formats-importer-broken-after-latest-Fiji-update-tp5012127p5012137.html
> Sorry for the inconvenience. Yesterday on the Fiji bugzilla[1] it was
> update site. Thank you for pointing out that core functionality is broken
> Bio-Formats components. We'll look into it and hope to have a fix shortly.
within a Fiji install, and not an issue with Bio-Formats itself. Let us
> Hi all,
>
> Sorry for the inconvenience. Yesterday on the Fiji bugzilla[1] it was
> reported that consumers of Bio-Formats were broken by the Bio-Formats
> update site. Thank you for pointing out that core functionality is broken
> as well!
>
> The Bio-Formats update site is certainly mixing 5.1.x and 5.0.x
> Bio-Formats components. We'll look into it and hope to have a fix shortly.
>
> Thanks!
> - Mark
>
> [1]
http://fiji.sc/bugzilla/show_bug.cgi?id=1034>
> On Tue, Mar 24, 2015 at 7:06 AM, Christophe Leterrier <
>
[hidden email]> wrote:
>
> > I confirm this, had to deselect the Bio-Format update site.
> >
> > On Tue, Mar 24, 2015 at 12:22 PM, Aryeh Weiss <
[hidden email]> wrote:
> >
> > > On 3/24/15 12:25 PM, Martin Höhne wrote:
> > >
> > >> Dear All,
> > >>
> > >> Fiji just did it´s auto-update after startup, and it seems that the
> > >> bioformats-importer is broken.
> > >>
> > >> Plugin > Bio-Formats > Bio-Formats Importer
> > >>
> > >> gives the error message pasted below. Is this a general problem or only
> > my
> > >> configuration (Latest Fiji on Win7)
> > >>
> > >> Thanks
> > >> Martin
> > >>
> > >> ---------
> > >> (Fiji Is Just) ImageJ 2.0.0-rc-26/1.49p; Java 1.6.0_24 [64-bit];
> > Windows 7
> > >> 6.1; 23MB of 2975MB (<1%)
> > >> java.lang.NoClassDefFoundError: Could not initialize class
> > >> loci.common.Location
> > >> at loci.plugins.in.ImporterOptions.parseArg(
> > >> ImporterOptions.java:171)
> > >> at loci.plugins.in.Importer.parseOptions(Importer.java:112)
> > >> at loci.plugins.in.Importer.run(Importer.java:69)
> > >> at loci.plugins.LociImporter.run(LociImporter.java:78)
> > >> at ij.IJ.runUserPlugIn(IJ.java:199)
> > >> at ij.IJ.runPlugIn(IJ.java:163)
> > >> at ij.Executer.runCommand(Executer.java:131)
> > >> at ij.Executer.run(Executer.java:64)
> > >> at java.lang.Thread.run(Thread.java:662)
> > >>
> > >>
> > >>
> > >>
> > > I confirm this on OSX Yosemite. You can work around by deselecting the
> > > Bioformats update site, so that you get Bioformats from the Fiji update
> > > site. They are still at 5.0.7, and it works. However, if you read
> > > complicated ND2 files, you will need the 5.0.2 version of the gpl jar
> > file.
> > >
> > > --aryeh
> > >
> > > --
> > > Aryeh Weiss
> > > Faculty of Engineering
> > > Bar Ilan University
> > > Ramat Gan 52900 Israel
> > >
> > > Ph: 972-3-5317638
> > > FAX: 972-3-7384051
> > >
> > >
> > > --
> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > >
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
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