Re: Running scripts with an open Virtual Hyperstack

Posted by Greg on Mar 25, 2015; 4:15pm
URL: http://imagej.273.s1.nabble.com/Running-scripts-with-an-open-Virtual-Hyperstack-tp5012163p5012169.html

Hi Curtis,

ya you are right, it might actually not related to scripts/plugins at all I think, this was just the first action I undertook after opening the virtual stack. That totally explains that slugginess ! The ImageJ2 datastructure option is and was disabled.

So this is the stack dump right after opening the virtual stack, ca. 1.2Gb are used by Fiji at this moment:

http://pastebin.com/ex1yG6JM

The next dump is (hopefully) right in the moment when the RAM is filled rather quickly (around 8Gb at that very moment), this time to initiate the RAM flood I just started the script manager (without trying to run an empty script):

http://pastebin.com/LucCkLcA

After that, every [next slice] fills up the RAM a little more right now it is at 14.2Gb (the input file is 7Gb):

http://pastebin.com/BmiEketC

In the end Fiji is now almost unresponsive and filled 18Gb of my physical RAM (I got 32). Even when I close the virtual hyperstack, there are still 18Gb used as indicated by the activity Monitor from Mac OS 10.10:

http://pastebin.com/jApGDHs2

Please tell me if you need anything else, I am running ImageJ 149p as Fiji.
Thanks for your help !

Best,
Greg