Re: adjusting watershed in imagej
Posted by
Michael Schmid on
Mar 28, 2015; 7:08pm
URL: http://imagej.273.s1.nabble.com/adjusting-watershed-in-imagej-tp5012219p5012231.html
Hi Courtney,
The ImageJ built-in Watershed can't be adjusted.
Besides the plugins mentioned by Jens, you could also try my Adjustable
Watershed plugin
http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:adjustable_watershed:startMichael
________________________________________________________________
On Fri, March 27, 2015 17:59, Courtney Hart wrote:
> Hi everyone,
> I'm running a macro that depends on using watershed (using imagej64) to
> segment cells that are touching/overlapping in the binary image. The
> problem is that it seems to erroneously be segmenting objects that I don't
> want it to. Is there a way to pass an argument to watershed from the
> macro
> in order to attenuate the effect? I'm new to imagej macro language, so
> any
> help would be appreciated!
>
> Thanks,
>
> Courtney Hart
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