Re: [EXTERNAL] Setting a default threshold, batch processing

Posted by Citron, Bruce on Apr 06, 2015; 5:48pm
URL: http://imagej.273.s1.nabble.com/Setting-a-default-threshold-batch-processing-tp5012370p5012371.html

You can use the setThreshold command, e.g., setThreshold(600, 4096);

Sometimes it works better if the threshold is automatically set using one
of the built in algorithms, e.g.,
setAutoThreshold(³Default dark²);
or
setAutoThreshold(³Intermodes dark²):

You can try a few options and see which gives you the best signal to noise.

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