Simple Neurite Tracer plugin - analyze skeleton

Posted by Rotem Oved on
URL: http://imagej.273.s1.nabble.com/Simple-Neurite-Tracer-plugin-analyze-skeleton-tp5012441.html

  Hi all,
I'm trying to use the plugin called"simple neurite tracer" on fiji (under "segmentation"), tomeasure filaments length mostly. The plugin does seem to use the informationstored at the images in order to set a scale, and at the beginning, at thewindow called "all paths", it shows me the measurements in microns,just as I want them. However, when I go at the plugin's window to analysis-> analyze skeleton, the information that is given then does not match theprevious information, and we believe it is given in pixels (I attached an imageto demonstrate). Is there any way to convert that, so that all the informationwill appear in microns?
If something is unclear I would be morethan happy to explain what I meant.
Thank you very much. 

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html