Re: Macro Problem : Process files from subfolder
Posted by chloroplaster on Apr 25, 2015; 7:15pm
URL: http://imagej.273.s1.nabble.com/Macro-Problem-Process-files-from-subfolder-tp5012610p5012611.html
Hi Again, I resolved but only partially the problem
My main folder has 3 folders, but my code only process 2 of the subfolders
Thanks for your help !!! :)
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Here is my new code
dir1=getDirectory('');
list1= getFileList (dir1);
for (i=0; i<(list1.length+1); i++)
{
dir2 = dir1+list1[i];
list2 = getFileList (dir2);
for (j=0; j<list2.length; j++)
{
open (dir2+list2[j]);
run("Split Channels");
setAutoThreshold("Default dark");
//run("Threshold...");
setThreshold(30000, 65535);
run("Analyze Particles...", "size=1-20 circularity=0.10-1.00 show=[Overlay Masks] summarize in_situ");
close();
run("Measure");
run("Gaussian Blur...", "sigma=5");
setAutoThreshold("Default dark");
//run("Threshold...");
setThreshold(9000, 34290);
run("Analyze Particles...", "size=50-Infinity show=[Overlay Masks] summarize in_situ");
close();
close();
setAutoThreshold("Default dark");
//run("Threshold...");
setThreshold(5700, 65535);
run("Analyze Particles...", "size=50-Infinity show=[Overlay Masks] summarize in_situ slice");
close();
}
}