Re: TrakEM problem writing XML after elastic alignment

Posted by Saalfeld, Stephan on Apr 29, 2015; 4:10am
URL: http://imagej.273.s1.nabble.com/TrakEM-problem-writing-XML-after-elastic-alignment-tp5012641p5012642.html

Hi Tommy,

does this happen with the latest Fiji update?

Does the error happen after you have deleted the directory

trakem2.cts

in your project directory before opening and aligning?  It's possible
that some leftovers there from a previous failure make problems.

Stephan



On Tue, 2015-04-28 at 17:51 -0700, tmacrina wrote:

> Hey guys,I have a project with a few layers of montaged images. I align the
> layers using the elastic mode. After the alignment process finishes (spring
> mesh optimization is completed, and the log reads "Done"), the patches are
> submitted for mipmap regeneration, but I encounter the first error below
> repeatedly for a large number of patches.If I "save as" the project, close
> it, and reopen it, I get a message "Error reading the project .xml file" and
> the second error below. (I can still open the original project - the one
> before elastic alignment - without an issue.) If I open the offending XML
> file in a text editor and look near the row listed in that second error, I
> do find content in a trailing section - see below for the few lines from the
> file.Any thoughts on how to prevent this from happening?Thanks for the
> help!Tommy*Error 1**Error 2**Excerpt from XML file*
>
>
>
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