Re: TrakEM: When are mipmaps necessary?

Posted by Albert Cardona-2 on May 03, 2015; 3:15am
URL: http://imagej.273.s1.nabble.com/TrakEM-When-are-mipmaps-necessary-tp5012681p5012682.html

Hi Tommy,

You'll need mipmaps to elastically align layers.
For exporting, you don't need to if you use the 16-bit exporter that reads
directly from the original images, transforming them on the fly.

Albert

2015-05-02 22:16 GMT-04:00 tmacrina <[hidden email]>:

> Hey guys,
>
> I'm working through implementing this pipeline in TrakEM (right now, using
> Jython and building from  Albert's script
> <
> http://fiji.sc/TrakEM2_Scripting#Create_a_TrakEM2_project_for_fast_visualization.2C_without_mipmaps
> >
> on the project website):
> 1. Import images
> 2. Apply CLAHE filter to patches
> 3. Elastically align layers
> 4. Export transformed layers as images
>
> When should I generate/regenerate mipmaps? Is is possible to get through
> that process without generating mipmaps at all?
>
> Thanks for the help!
>
> Tommy
>
>
>
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http://www.janelia.org/lab/cardona-lab
http://www.ini.uzh.ch/~acardona/

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