http://imagej.273.s1.nabble.com/Problems-running-Versatile-Wand-in-batch-mode-tp5012873p5012887.html
> Sorry, cannot reproduce the problem. An image is saved with a selection
> included.
>
> Running Fiji on Windows 7
>
> Kees
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> Avital Steinberg
> Sent: 20 May 2015 10:36
> To:
[hidden email]
> Subject: Re: Problems running Versatile Wand in batch mode
>
> Thanks, but the problem isn't solved. Can anyone else check if they're
> having similar problems running this code? Does this code create a
> selection in the saved image also for you?
>
> setBatchMode(true);
> open();
> image1ID = getImageID();
> open();
> image2ID = getImageID();
> selectImage(image1ID);
> if(isActive(image1ID)){
> print("The first image is active");
> }
> else {
> print("The first image isn't active"); }
>
> if(isActive(image2ID)){
> print("The second image is active"); } else {
> print("The second image isn't active"); } makePoint(1854, 726);
> run("Gaussian Blur...", "sigma=2"); run("Set Scale...", "distance=0");
> run("Versatile Wand", "value=60 color=-100 gradient=10
> connectedness=8-connected x=2 y=2 do"); run("ROI Manager...");
> roiManager("Add"); saveAs("Tiff");
>
>
> I am using ImageJ 1.49t7, which came with Java 1.6.0_065 (64 bit). I am
> running it on a mac, but I had the same problems also on a Linux machine
> with ImageJ 1.49s and java 1.6.0_24.
>
> MakePoint isn't needed, but it's besides the point, since the bug has
> nothing to do with it and exists also without it.
>
> Thanks,
> Avital
>
> On Tue, May 19, 2015 at 6:25 PM, Michael Schmid <
[hidden email]>
> wrote:
>
> > Hi Avital,
> >
> > sorry, I can't reproduce the problem. Your macro works; it blurs the
> > first image and does the wand selection on it. I also get the
> > selection in the ROI Manager.
> > I tried with both 8-bit grayscale as well as RGB images.
> >
> > What I don't understand is the "makePoint(1854, 726)" command;
> > Gaussian Blur does not care about point selections. So it blurs the
> whole image.
> >
> > I am using ImageJ 1.49u4, Java 1.6.0_45.
> >
> > Michael
> > ________________________________________________________________
> > On May 19, 2015, at 17:01, Avital Steinberg wrote:
> >
> > > Hi,
> > > I'm trying to use Versatile Wand in batch mode. The following macro
> > > works well in batch mode:
> > >
> > > setBatchMode(true);
> > > open();
> > > makePoint(1854, 726);
> > > run("Gaussian Blur...", "sigma=2");
> > > run("Set Scale...", "distance=0");
> > > run("Versatile Wand", "value=60 color=-100 gradient=10
> > > connectedness=8-connected x=2 y=2 do"); run("ROI Manager...");
> > > roiManager("Add"); saveAs("Tiff");
> > >
> > > However - when I try to work with multiple images, select the active
> > image
> > > and then use the Versatile Wand, no selection is created:
> > >
> > > setBatchMode(true);
> > > open();
> > > image1ID = getImageID();
> > > open();
> > > image2ID = getImageID();
> > > selectImage(image1ID);
> > > if(isActive(image1ID)){
> > > print("The first image is active"); } else {
> > > print("The first image isn't active"); }
> > >
> > > if(isActive(image2ID)){
> > > print("The second image is active"); } else {
> > > print("The second image isn't active"); } makePoint(1854, 726);
> > > run("Gaussian Blur...", "sigma=2"); run("Set Scale...",
> > > "distance=0"); run("Versatile Wand", "value=60 color=-100
> > > gradient=10
> > connectedness=8-connected x=2 y=2 do");
> > > run("ROI Manager...");
> > > roiManager("Add");
> > > saveAs("Tiff");
> > >
> > > Why wouldn't this script work? Only one image is active.
> > >
> > > Thank you,
> > > Avital
> >
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