fill holes based on size filter

Posted by PEARSON Matthew on May 21, 2015; 1:31pm
URL: http://imagej.273.s1.nabble.com/fill-holes-based-on-size-filter-tp5012897.html

Hi all,

I just wanted to clarify something in imageJ.  I'm using both "include holes" in analyse particles and "limit to threshold" in set measurements.  If there is an area within my thresholded object that is not included in the threshold yet is completely encapsulated by the threshold, what will be measured?  Limit to threshold suggests, this non-thresholded area would not be measured but include holes suggests it would be measured?

Which leads me on to the real problem at hand, i'd like to be able to filter the holes i am including based on size.  Smaller holes, enclosed by the threshold i'd include up to a certain size and holes any bigger i want to reject.  Is there a simple way to do this?

Thanks for the help,

Matt




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