Re: Rename labels in "Cell counter" plugin at starup

Posted by ctrueden on May 21, 2015; 5:16pm
URL: http://imagej.273.s1.nabble.com/Rename-labels-in-Cell-counter-plugin-at-starup-tp5012896p5012902.html

Hi Alexander,

> For my current project I need to manually count a number of cellular
> inclusions on electron microscopic images.

Are you sure you need to do it manually? ImageJ has many tools for
automated counting. It is much better for quantitative consistency. Please
see http://imagej.net/Segmentation for a starting point.

> I'm using "Cell counter" plugin for this. Is there a way to set the
> number of labels and their names when I start the plugin from a
> macros?

No, you would have to change the source code of the plugin [1].

Note that the Cell Counter plugin is old and unmaintained. Even if you are
doing manual counting, consider multi-point selections [2] with the ROI
Manager [3] instead.

Regards,
Curtis

[1] https://github.com/fiji/Cell_Counter
[2] http://imagej.net/docs/guide/146-19.html#sec:Multi-point-Tool
[3] http://imagej.net/docs/guide/146-30.html#sub:ROI-Manager...

On Thu, May 21, 2015 at 5:53 AM, Alexander V. Kalachev <
[hidden email]> wrote:

> Dear list members!
>
> For my current project I need to manually count a number of cellular
> inclusions on electron
> microscopic images. I'm using "Cell counter" plugin for this. Is there a
> way to set the number of
> labels and their names when I start the plugin from a macros?
>
> With kind regards,
> Alexander
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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