Re: TrakEM2 in 4D? (and surface contact)
Posted by
Thomas Boudier-3 on
May 28, 2015; 8:01am
URL: http://imagej.273.s1.nabble.com/TrakEM2-in-4D-and-surface-contact-tp5012944p5012963.html
Bonjour Gaelle,
In 3DRoiManager, you can analyse co-localisation between objects
including edge-contacts.
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:startBest,
Thomas
On 26/05/15 17:50, Gaelle Recher wrote:
> Dear all,
>
> Do you know if TrackEM2 is compatible with 4D images (3D+time)?
> So far I open each stack/time point in a separate layout, but I would be happy to process at least 3 or 4 successive time points and to re-use the same cells ID.
>
> Moreover I saw in an old discussion that someone was trying to measure the surface contact between cells, and there was no direct measurement of this. Do you know if this feature will be developed in the future? What would be the more straightforward way to estimate this efficiently at the moment?
>
> Thank you very much for your help,
> All the best,
>
> Gaëlle
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Thomas Boudier, Associate Professor, UPMC,
Université Pierre et Marie Curie, Paris, France.
BioInformatics Institute (BII)/IPAL, Singapore.
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